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1

Genome wide analysis of transcript levels after perturbation of the EGFR pathway in the Drosophila ovary

Katherine C. Jordan, Steven D. Hatfield, Michael Tworoger, Ellen J. Ward, Karin A. Fischer, Stuart Bowers, Hannele Ruohola-Baker

Journal:

Developmental Dynamics

Year:

2005

Language:

english

File:

PDF, 1.63 MB

english, 2005

2

Fringe-dependent notch activation and tramtrack function are required for specification of the polar cells in Drosophila oogenesis

Cassandra Althauser, Katherine C. Jordan, Wu-Min Deng, Hannele Ruohola-Baker

Journal:

Developmental Dynamics

Year:

2005

Language:

english

File:

PDF, 645 KB

english, 2005

3

Embryonal carcinoma cell induction of miRNA and mRNA changes in co-cultured prostate stromal fibromuscular cells

Eneida F. Vêncio, Laura E. Pascal, Laura S. Page, Gareth Denyer, Amy J. Wang, Hannele Ruohola-Baker, Shile Zhang, Kai Wang, David J. Galas, Alvin Y. Liu

Journal:

Journal of Cellular Physiology

Year:

2011

Language:

english

File:

PDF, 959 KB

english, 2011

4

Notch signaling through Tramtrack bypasses the mitosis promoting activity of the JNK pathway in the mitotic-to-endocycle transition of Drosophila follicle cells

Katherine C Jordan, Valerie Schaeffer, Karin A Fischer, Elizabeth E Gray, Hannele Ruohola-Baker

Journal:

BMC Developmental Biology

Year:

2006

Language:

english

File:

PDF, 6.31 MB

english, 2006

5

The conserved WW-domain binding sites in Dystroglycan C-terminus are essential but partially redundant for Dystroglycan function

AS Yatsenko, MM Kucherenko, M Pantoja, KA Fischer, J Madeoy, W-M Deng, M Schneider, S Baumgartner, J Akey, HR Shcherbata, H Ruohola-Baker

Journal:

BMC Developmental Biology

Year:

2009

Language:

english

File:

PDF, 1.48 MB

english, 2009

6

maelstromis required to position the MTOC in stage 2–6Drosophilaoocytes

N. Clegg, S. Findley, A. Mahowald, H. Ruohola-Baker

Journal:

Development Genes and Evolution

Year:

2001

Language:

english

File:

PDF, 194 KB

english, 2001

7

Role of Notch pathway in terminal follicle cell differentiation duringDrosophilaoogenesis

Michele Keller Larkin, W.-M. Deng, Kristen Holder, Michael Tworoger, Nigel Clegg, H. Ruohola-Baker

Journal:

Development Genes and Evolution

Year:

1999

Language:

english

File:

PDF, 1.03 MB

english, 1999

8

microRNA and stem cell function

Steven Hatfield, Hannele Ruohola-Baker

Journal:

Cell and Tissue Research

Year:

2008

Language:

english

File:

PDF, 204 KB

english, 2008

9

10.1038/74294

Ruohola-Baker, Hannele, Jordan, Katherine C., Clegg, Nigel J., Blasi, Jennifer A., Morimoto, Alyssa M., Sen, Jonaki, Stein, David, McNeill, Helen, Deng, Wu-Min, Tworoger, Michael

Journal:

Nature Genetics

Year:

2000

Language:

english

File:

PDF, 1.55 MB

english, 2000

10

Stem cell division is regulated by the microRNA pathway

Hatfield, S. D., Shcherbata, H. R., Fischer, K. A., Nakahara, K., Carthew, R. W., Ruohola-Baker, H.

Journal:

Year:

2005

Language:

english

File:

PDF, 450 KB

english, 2005

11

Dissecting muscle and neuronal disorders in a Drosophila model of muscular dystrophy

Shcherbata, Halyna R, Yatsenko, Andriy S, Patterson, Larissa, Sood, Vanita D, Nudel, Uri, Yaffe, David, Baker, David, Ruohola-Baker, Hannele

Journal:

The EMBO Journal

Year:

2007

Language:

english

File:

PDF, 917 KB

english, 2007

12

The role of gene cassettes in axis formation during Drosophila oogenesis

Hannele Ruohola-Baker, Lily Yeh Jan, Yuh Nung Jan

Journal:

Trends in Genetics

Year:

1994

Language:

english

File:

PDF, 943 KB

english, 1994

13

Notch-Dependent Fizzy-Related/Hec1/Cdh1 Expression Is Required for the Mitotic-to-Endocycle Transition in Drosophila Follicle Cells

Valerie Schaeffer, Cassandra Althauser, Halyna R Shcherbata, Wu-Min Deng, Hannele Ruohola-Baker

Journal:

Current Biology

Year:

2004

Language:

english

File:

PDF, 480 KB

english, 2004

14

Stem Cells Signal to the Niche through the Notch Pathway in the Drosophila Ovary

Ellen J. Ward, Halyna R. Shcherbata, Steven H. Reynolds, Karin A. Fischer, Steven D. Hatfield, Hannele Ruohola-Baker

Journal:

Current Biology

Year:

2006

Language:

english

File:

PDF, 1.19 MB

english, 2006

15

Transient posterior localization of a kinesin fusion protein reflects anteroposterior polarity of the Drosophila oocyte

Ira Clark, Edward Giniger, Hannele Ruohola-Baker, Lily Yeh Jan, Yuh Nung Jan

Journal:

Current Biology

Year:

1994

Language:

english

File:

PDF, 1.68 MB

english, 1994

16

Laminin A is required for follicle cell–oocyte signaling that leads to establishment of the anterior–posterior axis in Drosophila

Wu-Min Deng, Hannele Ruohola-Baker

Journal:

Current Biology

Year:

2000

Language:

english

File:

PDF, 2.65 MB

english, 2000

17

Small RNAs: Keeping Stem Cells in Line

Bradford M. Stadler, Hannele Ruohola-Baker

Journal:

Year:

2008

Language:

english

File:

PDF, 319 KB

english, 2008

18

PIWI Goes Solo in the Soma

Steven H. Reynolds, Hannele Ruohola-Baker

Journal:

Developmental Cell

Year:

2009

Language:

english

File:

PDF, 58 KB

english, 2009

19

Stage-Specific Differences in the Requirements for Germline Stem Cell Maintenance in the Drosophila Ovary

Halyna R. Shcherbata, Ellen J. Ward, Karin A. Fischer, Jenn-Yah Yu, Steven H. Reynolds, Chun-Hong Chen, Peizhang Xu, Bruce A. Hay, Hannele Ruohola-Baker

Journal:

Year:

2007

Language:

english

File:

PDF, 3.98 MB

english, 2007

20

Border of Notch activity establishes a boundary between the two dorsal appendage tube cell types

Ellen J. Ward, Xiaofeng Zhou, Lynn M. Riddiford, Celeste A. Berg, Hannele Ruohola-Baker

Journal:

Developmental Biology

Year:

2006

Language:

english

File:

PDF, 685 KB

english, 2006

21

Genetic elevation of Sphingosine 1-phosphate suppresses dystrophic muscle phenotypes in Drosophila

Pantoja, M., Fischer, K. A., Ieronimakis, N., Reyes, M., Ruohola-Baker, H.

Journal:

Development (The Company of Biologists)

Year:

2013

Language:

english

File:

PDF, 1.31 MB

english, 2013

22

Spatially localized rhomboid is required for establishment of the dorsal-ventral axis in Drosophila oogenesis

Hannele Ruohola-Baker, Ellsworth Grell, Tze-Bin Chou, David Baker, Lily Yeh Jan, Yuh Nung Jan

Journal:

Year:

1993

Language:

english

File:

PDF, 18.04 MB

english, 1993

23

Hypoxia induces re-entry of committed cells into pluripotency

Mathieu, Julie, Zhang, Zhan, Nelson, Angelique, Lamba, Deepak A., Reh, Thomas A., Ware, Carol, Ruohola-Baker, Hannele

Journal:

Year:

2013

Language:

english

File:

PDF, 1.31 MB

english, 2013

24

Increased sphingosine-1-phosphate improves muscle regeneration in acutely injuredmdxmice

Ieronimakis, Nicholas, Pantoja, Mario, Hays, Aislinn L, Dosey, Timothy L, Qi, Junlin, Fischer, Karin A, Hoofnagle, Andrew N, Sadilek, Martin, Chamberlain, Jeffrey S, Ruohola-Baker, Hannele, Reyes, Mor

Journal:

Skeletal Muscle

Year:

2013

Language:

english

File:

PDF, 2.41 MB

english, 2013

25

miRNA sensitivity to Drosha levels correlates with pre-miRNA secondary structure

Sperber, H., Beem, A., Shannon, S., Jones, R., Banik, P., Chen, Y., Ku, S., Varani, G., Yao, S., Ruohola-Baker, H.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.21 MB

english, 2014

26

Hypoxia-Inducible Factors Have Distinct and Stage-Specific Roles during Reprogramming of Human Cells to Pluripotency

Mathieu, Julie, Zhou, Wenyu, Xing, Yalan, Sperber, Henrik, Ferreccio, Amy, Agoston, Zsuzsa, Kuppusamy, Kavitha T., Moon, Randall T., Ruohola-Baker, Hannele

Journal:

Year:

2014

Language:

english

File:

PDF, 2.91 MB

english, 2014

27

Tri-iodo-l-thyronine promotes the maturation of human cardiomyocytes-derived from induced pluripotent stem cells

Yang, Xiulan, Rodriguez, Marita, Pabon, Lil, Fischer, Karin A., Reinecke, Hans, Regnier, Michael, Sniadecki, Nathan J., Ruohola-Baker, Hannele, Murry, Charles E.

Journal:

Journal of Molecular and Cellular Cardiology

Year:

2014

Language:

english

File:

PDF, 1.52 MB

english, 2014

28

Characterization of Differentially Expressed Genes in Purified Drosophila Follicle Cells: Toward a General Strategy for Cell Type-Specific Developmental Analysis

Zev Bryant, Lakshman Subrahmanyan, Michael Tworoger, Leah LaTray, Chun-Rong Liu, Meng-Jin Li, Ger van den Engh and Hannele Ruohola-Baker

Journal:

Proceedings of the National Academy of Sciences

Year:

1999

Language:

english

File:

PDF, 1.51 MB

english, 1999

29

THE HYPOXIC CONTROL OF STEMNESS

Ruohola-Baker, Hannele

Journal:

Free Radical Biology and Medicine

Year:

2014

File:

PDF, 227 KB

2014

30

Drosophila as a starting point for developing therapeutics for the rare disease Duchenne Muscular Dystrophy

Pantoja, Mario, Ruohola-Baker, Hannele

Journal:

Year:

2013

Language:

english

File:

PDF, 322 KB

english, 2013

31

A Putative Src Homology 3 Domain Binding Motif but Not the C-terminal Dystrophin WW Domain Binding Motif Is Required for Dystroglycan Function in Cellular Polarity in Drosophila

Yatsenko, A. S., Gray, E. E., Shcherbata, H. R., Patterson, L. B., Sood, V. D., Kucherenko, M. M., Baker, D., Ruohola-Baker, H.

Journal:

Journal of Biological Chemistry

Year:

2007

Language:

english

File:

PDF, 1.21 MB

english, 2007

32

Characterization of differentially expressed genes in purified Drosophila follicle cells: Toward a general strategy for cell type-specific developmental analysis

Bryant, Z., Subrahmanyan, L., Tworoger, M., LaTray, L., Liu, C.-R., Li, M.-J., van den Engh, G., Ruohola-Baker, H.

Journal:

Proceedings of the National Academy of Sciences

Year:

1999

Language:

english

File:

PDF, 442 KB

english, 1999

33

Loss-of-Function Screen Reveals Novel Regulators Required for Drosophila Germline Stem Cell Self-Renewal

Xing, Y., Kurtz, I., Thuparani, M., Legard, J., Ruohola-Baker, H.

Journal:

Year:

2012

Language:

english

File:

PDF, 2.85 MB

english, 2012

34

Tie-mediated signal from apoptotic cells protects stem cells in Drosophila melanogaster

Xing, Yalan, Su, Tin Tin, Ruohola-Baker, Hannele

Journal:

Nature Communications

Year:

2015

Language:

english

File:

PDF, 3.32 MB

english, 2015

35

Dicer-1-dependent Dacapo suppression acts downstream of Insulin receptor in regulating cell division of Drosophila germline stem cells

Yu, J.-Y., Reynolds, S. H., Hatfield, S. D., Shcherbata, H. R., Fischer, K. A., Ward, E. J., Long, D., Ding, Y., Ruohola-Baker, H.

Journal:

Development (The Company of Biologists)

Year:

2009

Language:

english

File:

PDF, 1.78 MB

english, 2009

36

Molecular mechanism of sphingosine-1-phosphate action in Duchenne muscular dystrophy

Nguyen-Tran, D.-H., Hait, N. C., Sperber, H., Qi, J., Fischer, K., Ieronimakis, N., Pantoja, M., Hays, A., Allegood, J., Reyes, M., Spiegel, S., Ruohola-Baker, H.

Journal:

Disease Models & Mechanisms

Year:

2014

Language:

english

File:

PDF, 3.26 MB

english, 2014

37

The MicroRNA Pathway Plays a Regulatory Role in Stem Cell Division

Shcherbata, H.R., Hatfield, S., Ward, E.J., Reynolds, S., Fischer, K.A., Ruohola-Baker, H.

Journal:

Year:

2006

Language:

english

File:

PDF, 222 KB

english, 2006

38

Metabolic remodeling in early development and cardiomyocyte maturation

Ellen Kreipke, Rebecca, Wang, Yuliang, Miklas, Jason Wayne, Mathieu, Julie, Ruohola-Baker, Hannele

Journal:

Seminars in Cell & Developmental Biology

Year:

2016

Language:

english

File:

PDF, 2.34 MB

english, 2016

39

Metabolic RemodeLIN of Pluripotency

Mathieu, Julie, Ruohola-Baker, Hannele

Journal:

Year:

2016

Language:

english

File:

PDF, 191 KB

english, 2016

40

Wnt/β-catenin signaling promotes self-renewal and inhibits the primed state transition in naïve human embryonic stem cells

Xu, Zhuojin, Robitaille, Aaron M., Berndt, Jason D., Davidson, Kathryn C., Fischer, Karin A., Mathieu, Julie, Potter, Jennifer C., Ruohola-Baker, Hannele, Moon, Randall T.

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.10 MB

english, 2016

41

Mature Let-7 miRNAs fine tune expression of LIN28B in pluripotent human embryonic stem cells

Rahkonen, Nelly, Stubb, Aki, Malonzo, Maia, Edelman, Sanna, Emani, Maheswara Reddy, Närvä, Elisa, Lähdesmäki, Harri, Ruohola-Baker, Hannele, Lahesmaa, Riitta, Lund, Riikka

Journal:

Stem Cell Research

Year:

2016

Language:

english

File:

PDF, 777 KB

english, 2016

42

WNT/β-catenin signaling regulates mitochondrial activity to alter the oncogenic potential of melanoma in a PTEN-dependent manner

Brown, K, Yang, P, Salvador, D, Kulikauskas, R, Ruohola-Baker, H, Robitaille, A M, Chien, A J, Moon, R T, Sherwood, V

Journal:

Year:

2017

Language:

english

File:

PDF, 4.16 MB

english, 2017

43

Metabolic remodeling during the loss and acquisition of pluripotency

Mathieu, Julie, Ruohola-Baker, Hannele

Journal:

Development (The Company of Biologists)

Year:

2017

Language:

english

File:

PDF, 8.76 MB

english, 2017

44

Assessment of Hypoxia Inducible Factor Levels in Cancer Cell Lines upon Hypoxic Induction Using a Novel Reporter Construct

Zhou, Wenyu, Dosey, Timothy L., Biechele, Travis, Moon, Randall T., Horwitz, Marshall S., Ruohola-Baker, Hannele, Qin, Gangjian

Journal:

Year:

2011

Language:

english

File:

PDF, 800 KB

english, 2011

45

Loss of foxo rescues stem cell aging in Drosophila germ line

Artoni, Filippo, Kreipke, Rebecca E, Palmeira, Ondina, Dixon, Connor, Goldberg, Zachary, Ruohola-Baker, Hannele

Journal:

Year:

2017

Language:

english

File:

PDF, 5.86 MB

english, 2017

46

Enhancer Chromatin and 3D Genome Architecture Changes from Naive to Primed Human Embryonic Stem Cell States

Battle, Stephanie L., Doni Jayavelu, Naresh, Azad, Robert N., Hesson, Jennifer, Ahmed, Faria N., Overbey, Eliah G., Zoller, Joseph A., Mathieu, Julie, Ruohola-Baker, Hannele, Ware, Carol B., Hawkins,

Journal:

Stem Cell Reports

Year:

2019

Language:

english

File:

PDF, 4.11 MB

english, 2019

47

Enhancer Chromatin and 3D Genome Architecture Changes from Naive to Primed Human Embryonic Stem Cell States

Battle, Stephanie L., Doni Jayavelu, Naresh, Azad, Robert N., Hesson, Jennifer, Ahmed, Faria N., Overbey, Eliah G., Zoller, Joseph A., Mathieu, Julie, Ruohola-Baker, Hannele, Ware, Carol B., Hawkins,

Journal:

Stem Cell Reports

Year:

2019

File:

PDF, 4.11 MB

2019

48

microRNAs Regulating Human and Mouse Naïve Pluripotency

Wang, Yuliang, Hussein, Abdiasis M., Somasundaram, Logeshwaran, Sankar, Rithika, Detraux, Damien, Mathieu, Julie, Ruohola-Baker, Hannele

Journal:

International Journal of Molecular Sciences

Year:

2019

Language:

english

File:

PDF, 3.57 MB

english, 2019

49

microRNAs Regulating Human and Mouse Naïve Pluripotency

Wang, Yuliang, Hussein, Abdiasis M., Somasundaram, Logeshwaran, Sankar, Rithika, Detraux, Damien, Mathieu, Julie, Ruohola-Baker, Hannele

Journal:

International Journal of Molecular Sciences

Year:

2019

File:

PDF, 3.57 MB

2019

50

Germline Stem Cell Aging in the Drosophila Ovary

Roy Ishibashi, Julien, Taslim, Tommy Henry, Ruohola-Baker, Hannele

Journal:

Current Opinion in Insect Science

Year:

2020

File:

PDF, 1.87 MB

2020

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